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The Facility is open Monday to Friday, 9 a.m. to 5 p.m.  However, training is offered for users to work independently at other times. Below you will find more comprehensive information on our three microscope systems.

Click to learn more about the following instruments and services:

 

Zeiss LSM 410 Confocal Laser Scanning Microscope

This is a classical scanning confocal system. Out-of-focus light is blocked by an adjustable pinhole which allows you to image "optical sections" as thin as 0.7 microns. The optical sections can be combined to form a 3-dimensional data set.
  • Zeiss Axiovert 100TV inverted microscope
  • Fluorescence excitation by 15 mW argon-krypton laser at 488, 568, and/or 647 nm
  • Filters for green, red, and far-red emitting fluorescent labels (up to three simultaneously)
  • Phase or differential interference contrast (Nomarski) imaging
    • Although these images are not confocal, they are superimposable on the confocal images and can be used to locate non-fluorescent structures
  • 10x, 20x, 40x, 63x, and 100x objectives; you may also bring any other Zeiss infinity-corrected objective suitable for your application
  • Focus motor with resolution < 100nm
  • Pentium PC computer with Zeiss LSM software for image viewing and analysis; users may legally copy this software

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Inovision Digital Deconvolution System

This is a conventional "wide-field" microscope. With the accompanying software, however, fluorescence images taken at different focal depths can be processed to remove out-of-focus light, generating optical sections similar to those collected by a confocal microscope
  • Zeiss Axiovert S 100 inverted microscope
  • Fluorescence and phase/DIC imaging
  • Filters for blue, green, and red emitting fluorescent labels (up to three simultaneously)
  • Filters for CFP and YFP variants of the green fluorescent protein
  • 10x, 25x, 40x, 63x, and 100x immersion objectives; you may also bring any other Zeiss infinity-corrected objective
  • Sensitive cooled CCD camera (Hamamasu Orca II)
  • Focus motor and motorized filter wheel
  • Digital deconvolution and image analysis on a Silicon Graphics O2 computer with Inovision software

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Zeiss LSM 510 NLO Multiphoton Confocal Microscope

This system is a laser scanning confocal microscope with multiphoton capability. It excites traditional fluorescent dyes (which normally require visible wavelengths) with rapid, intense pulses of infrared laser light. As a result of this design, multiphoton microscopy is far less toxic to living samples and can see much deeper into cells, tissues, organs, and even living organisms. Our instrument is optimized for simultaneous imaging and electrophysiological studies.
  • Zeiss Axioskop 2 FS MOT upright microscope
  • Fixed stage with motorized x, y, and z control
  • Confocal imaging with two visible-light lasers:
    • 25 mW argon laser exciting at 458, 488, and 514 nm
    • 1 mW helium-neon laser exciting at 543 nm
  • Multiphoton imaging with a Mira 900-F femtosecond-pulsed titanium-sapphire laser (typical output power 800 mW) tunable from 700-900 nm
  • Filters for blue, green, yellow, and red emitting fluorescent labels
  • Phase or differential interference contrast (Nomarski) imaging, including infrared DIC
    • Although not a confocal image, this can serve as a convenient, superimposable companion to the fluorescence image and can be used to locate non-fluorescent structures
  • 10x and 40x objectives; the 40x can be used with or without a coverslip and is designed for electrophysiological applications. Users may also bring other suitable Zeiss objectives.
  • Pentium PC computer running Windows NT 4.0 with Zeiss 3D for LSM software for analysis and 3D reconstruction

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Accessory Equipment and Computing

The Facility provides a range of supporting equipment for live imaging and data analysis. In addition, the staff provides consultation and training on the use of various software packages for image enhancement and analysis.
  • Stage and objective heaters; circulating heating/cooling water bath
  • High-precision peristaltic pump
  • Image analysis workstation (Windows NT 4.0)
  • Software capabilities including the following:
    • Image enhancement, pseudocolor, background and crosstalk correction
    • 3D rendering of data using stereo, depth coding, arbitrary sectioning or rotating projections
    • Production of time-lapse movies; particle tracking
    • Morphometry (measurement of object dimensions)
    • Quantitative intensity and colocalization measurements
    • Macro programming for specialized tasks
  • Data transfer
    • All systems record images digitally as TIFF files, which are easily viewed on Macintosh, Windows, and UNIX/LINUX computer systems.
    • Images can be conveniently viewed and laid out as figures using software packages such as Adobe Photoshop and Microsoft Powerpoint.
    • Files can be stored on Zip disks, Jaz disks, or CDs; they can also be transferred to your lab computers via Ethernet.

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Usage, Services & Fees
Cancer Center Members
Non-members

Call, e-mail, or stop by to discuss your experiments before you use the Facility. A sign-up sheet for each instrument is available to all users at P&S 12-407 every Wednesday at 9:00 a.m. (it fills up quickly!) You may sign up for a maximum of four hours per day and eight hours per week, unless arranged otherwise with the manager. You must cancel in advance or be charged for any time that you don't use.

*A discount is offered for off-hours use by trained users

Microscope Usage
$35/hr*
$70/hr*
Training
included in user fee
Technical Support
included in user fee
Consultation
included in user fee

Please contact the Facility to inquire about rates for outside (non-Columbia-affiliated) users.

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